Selected Publications of Students and Alumni

Author Class Title First Author
Arboleda, Valerie 2012 Mutations in the PCNA-binding domain of CDKN1C cause IMAGe syndrome Y
Bondhus, Leroy Balancing the transcriptome: leveraging sample similarity to improve measures of gene specificity Y
Bondhus, Leroy DMRscaler: a scale-aware method to identify regions of differential DNA methylation spanning basepair to multi-megabase features Y
Chen, Daniel 2003 Accommodating chromosome inversions in linkage analysis Y
Clark, Michael 2010 The genomic sequence of a cytogenetically aberrant human cancer cell line Y
Doss, Sudheer 2006 Cis-acting expression quantitative trait loci in mice Y
Durvasula, Arun 2021 Recovering signals of ghost archaic introgression in African populations Y
Durvasula, Arun 2021 A statistical model for reference-free inference of archaic local ancestry Y
Durvasula, Arun 2021 Negative selection on complex traits limits genetic risk prediction accuracy between populations Y
Fouse, Shun 2008 Promoter CpG methylation contributes to ES cell gene regulation in parallel with Oct4/Nanog, PcG complex, and histone H3 K4/K27 trimethylation Y
He, Huanhuan (Mahsa) 2013 Endothelial cells provide an instructive niche for the differentiation and functional polarization of M2-like macrophages Y
Kuraishy, Ali 2007 TORC2 regulates germinal center repression of the TCL1 oncoprotein to promote B cell development and inhibit transformation Y
Kustahivich, Vlad 2003 Transmission disequilibrium testing of dopamine-related candidate gene polymorphisms in ADHD: confirmation of association of ADHD with DRD4 and DRD5 Y
Nazarian, Ramin 2007 Biogenesis of lysosome-related organelles complex 3 (BLOC-3): a complex containing the Hermansky-Pudlak syndrome (HPS) proteins HPS1 and HPS4 Y
Orozco, Luz 2011 Unraveling inflammatory responses using systems genetics and gene-environment interactions in macrophages Y
Palafox, Maria 2022 From Chemoproteomic-Detected Amino Acids to Genomic Coordinates: Insights into Precise Multi-omic Data Integration Y
Phan, Jack 2004 Lipin, a lipodystrophy and obesity gene Y
Plasisier, Christopher 2009 A systems genetics approach implicates USF1, FADS3, and other causal candidate genes for familial combined hyperlipidemia Y
Romanoski, Casey 2010 Systems genetics analysis of gene-by-environment interactions in human cells Y
Shen, Yin 2008 X-inactivation in female human embryonic stem cells is in a nonrandom pattern and prone to epigenetic alterations Y
Stone, Jennifer 2006 Evidence for sex-specific risk alleles in autism spectrum disorder Y
Strom, Samuel 2010 High-density SNP association study of the 17q21 chromosomal region linked to autism identifies CACNA1G as a novel candidate gene Y
Taylor, Paige 2015 Mutations in DYNC2LI1 disrupt cilia function and cause short rib polydactyly syndrome Y
Weissglas-Voldkov, Daphan 2009 The N342S MYLIP polymorphism is associated with high total cholesterol and increased LDL receptor degradation in humans Y